hairloom.collect
================

.. automodule:: hairloom.collect

   
   .. rubric:: Functions

   .. autosummary::
   
      enumerate_breakpoints
      extract_read_data
      extract_split_alignments
      find_presence_of_matching_sv
      fix_lower_support_coordinates
      get_breakpoint_support_from_bundle
      get_normalized_sv
      get_secondaries
      get_svtype
      make_bundle
      make_split_read_table
      make_tumor_sv_table
      map_similar_coordinate_to_higher_rank
      normalize_sv_table
      pull_breakpoints_from_reads_in_sv_regions
      pull_sv_supporting_reads_from_bundle
   
   .. rubric:: Classes

   .. autosummary::
   
      Breakpoint
      BreakpointPair
      Counter
      SplitAlignment